We maintain a variety of BLAST databases constructed from reference genome and amino acid sequences
in the public domain.
| Curated Sequence Databases |
| database | source | description |
| nr | NCBI | Non-redundant protein sequence database |
| nt | NCBI | Redundant nucleotide database from GenBank |
| env | NCBI | Environmental genome sequencing translations |
| mito | NCBI | Protein sequences from mitochondrial genomes |
| igseqprot | NCBI | Immunoglobulin protein sequences |
| pdbaa | NCBI | Protein sequences for PDB entries |
| swissprot | NCBI | SWISS-PROT database, last major release |
| Patented Sequence Databases |
| database | source | description |
| pataa | NCBI | Patent protein sequence database |
| patnt | NCBI | Patent nucleotide sequence database |
| EST Sequence Databases |
| database | source | description |
| est.nal | NCBI | Complete EST database |
| est.human | NCBI | Human EST database |
| est.mouse | NCBI | Mouse EST database |
| est.others | NCBI | ESTs, without entries from human or mouse |
| High-Throughput Sequence Databases |
| database | source | description |
| gss | NCBI | Genomic Survey Sequences (BAC ends) |
| htgs | NCBI | High Throughput Genomic Sequences |
| wgs | NCBI | Whole Genome Shotgun sequence assembly |
| sts | NCBI | Sequence Tag Sites database |
| vector | NCBI | Vector sequences from GenBank |
| Sequences Released/Updated in the Past 30 Days |
| database | source | description |
| month.aa | NCBI | Protein sequences |
| month.est.human | NCBI | Human ESTs |
| month.est.mouse | NCBI | Mouse ESTs |
| month.est.others | NCBI | ESTs, without entries from human or mouse |
| month.gss | NCBI | Genome survey sequences |
| month.htgs | NCBI | High-throughput genome sequences |
| month.nt | NCBI | Nucleotide sequences |
| Genome Sequence Databases |
| species | source | description |
| aegypti | EMBL | Aedes aegypti (Yellow fever mosquito) |
| gambiae | EMBL | Anopheles gambiae (African malaria mosquito) |
| cattle | EMBL | Bos taurus (Cattle) |
| nematode | EMBL | Caenorhabditis elegans (Nematode) |
| dog | EMBL | Canis familiaris (Dog) |
| seasquirt.i | EMBL | Ciona intestinalis (Sea squirt) |
| seasquirt.s | EMBL | Ciona savignyi (Sea squirt) |
| zebrafish | EMBL | Danio rerio (Zebrafish) |
| armadillo | EMBL | Dasypus novemcinctus (Nine-banded armadillo) |
| fly | EMBL | Drosophila melanogaster (Fruit fly) |
| ecoli | NCBI | Escherichia coli bacterium |
| hedgehog | EMBL | Echinops telfairi (Small Madagascar hedgehog) |
| chicken | EMBL | Gallus gallus (Chicken) |
| stickleback | EMBL | Gasterosteus aculeatus (3-spined stickleback) |
| human | EMBL | Homo sapiens (Human) |
| elephant | EMBL | Loxodonta africana (African savanna elephant) |
| monkey | EMBL | Macaca mulatta (Rhesus monkey) |
| opossum | EMBL | Monodelphis domestica (Short-tailed opossum) |
| mouse | EMBL | Mus musculus (House mouse) |
| platypus | EMBL | Ornithorhynchus anatinus (Platypus) |
| rabbit | EMBL | Oryctolagus cuniculus (Rabbit) |
| medaka | EMBL | Oryzias latipes (Japanese medaka) |
| chimp | EMBL | Pan troglodytes (Chimpanzee) |
| rat | EMBL | Rattus norvegicus (Norway rat) |
| yeast | EMBL | Saccharomyces cerevisiae (Baker's yeast) |
| fugu | EMBL | Takifugu rubripes (Torafugu) |
| pufferfish | EMBL | Tetraodon nigroviridis (Fresh water pufferfish) |
| frog | EMBL | Xenopus tropicalis (Western clawed frog) |
| pombe | Sanger | Schizosaccharomyces pombe |
| arabidopsis | Sanger | Arabidopsis thaliana |
| lancelet | Sanger | Branchiostoma floridae |
| tomato | Sanger | Solanum lycopersicum (Tomato) |
| marmoset | Sanger | Callithrix jacchus (White-tufted-ear marmoset) |
| carp | Sanger | Cyprinus carpio (Common Carp) |
| chicken | Sanger | Gallus gallus (Chicken) |
| gorilla | Sanger | Gorilla gorilla (Gorilla) |
| barrelmedic | Sanger | Medicago truncatula (Barrel medic) |
| butterfly | Sanger | Heliconius melpomene |
| gibbon | Sanger | Hylobates syndactylus (Gibbon) |
| periwinkle | Sanger | Littorina saxatilis |
| wallaby | Sanger | Macropus eugenii (Tammar Wallaby) |
| lemur | Sanger | Microcebus murinus (Grey mouse lemur) |
| marsupmouse | Sanger | Sminthopsis macroura (Marsupial Mouse) |
| pig | Sanger | Sus scrofa (Pig) |
| tetraodon | Sanger | Tetraodon nigroviridis (Tetraodon) |
| Pathogen Sequence Databases |
| species | source | description |
| pathogen | Sanger | Aspergillus fumigatus (invasive aspergillosis) |
| pathogen | Sanger | Candida albicans |
| pathogen | Sanger | Candida dubliniensis |
| pathogen | Sanger | Phytophthora infestans (potato blight) |
| pathogen | Sanger | Pneumocystis carinii |
| pathogen | Sanger | Haemonchus contortus (nematode parasite of goats/sheep) |
| pathogen | Sanger | Schistosoma mansoni (schistosomiasis/bilharzia) |
| pathogen | Sanger | Bacteroides fragilis 638R |
| pathogen | Sanger | Bacteroides fragilis NCTC9343 |
| pathogen | Sanger | Bacteriovorax marinus |
| pathogen | Sanger | Bordetella avium |
| pathogen | Sanger | Bordetella bronchiseptica |
| pathogen | Sanger | Bordetella parapertussis |
| pathogen | Sanger | Bordetella pertussis |
| pathogen | Sanger | Burkholderia cenocepacia |
| pathogen | Sanger | Burkholderia pseudomallei |
| pathogen | Sanger | Campylobacter jejuni |
| pathogen | Sanger | Chlamydia trachomatis 2497A |
| pathogen | Sanger | Chlamydia trachomatis B |
| pathogen | Sanger | Chlamydia trachomatis Jali |
| pathogen | Sanger | Chlamydia trachomatis L2 |
| pathogen | Sanger | Chlamydophila abortus |
| pathogen | Sanger | Citrobacter rodentium |
| pathogen | Sanger | Clavibacter michiganensis |
| pathogen | Sanger | Clostridium botulinum |
| pathogen | Sanger | Clostridium difficile |
| pathogen | Sanger | Corynebacterium diphtheriae |
| pathogen | Sanger | Ehrlichia ruminantium |
| pathogen | Sanger | Erwinia amylovora |
| pathogen | Sanger | Erwinia carotovora |
| pathogen | Sanger | Escherichia coli 042 |
| pathogen | Sanger | Escherichia coli E2348 |
| pathogen | Sanger | Haemophilus influenzae |
| pathogen | Sanger | Helicobacter mustelae |
| pathogen | Sanger | Mycobacterium bovis |
| pathogen | Sanger | Mycobacterium bovis BCG |
| pathogen | Sanger | Mycobacterium leprae |
| pathogen | Sanger | Mycobacterium marinum |
| pathogen | Sanger | Mycobacterium microti |
| pathogen | Sanger | Mycobacterium tuberculosis |
| pathogen | Sanger | Neisseria lactamica |
| pathogen | Sanger | Neisseria meningitidis A |
| pathogen | Sanger | Neisseria meningitidis C |
| pathogen | Sanger | Photorhabdus asymbiotica |
| pathogen | Sanger | Pseudomonas fluorescens |
| pathogen | Sanger | Proteus mirabilis |
| pathogen | Sanger | Rhizobium leguminosarum |
| pathogen | Sanger | Rhodococcus equi |
| pathogen | Sanger | Salmonella bongori |
| pathogen | Sanger | Salmonella enteritidis PT4 |
| pathogen | Sanger | Salmonella gallinarum |
| pathogen | Sanger | Salmonella paratyphi A |
| pathogen | Sanger | Salmonella typhi |
| pathogen | Sanger | Salmonella typhimurium DT104 |
| pathogen | Sanger | Salmonella typhimurium SL1344 |
| pathogen | Sanger | Serratia marcescens |
| pathogen | Sanger | Shigella dysenteriae M131649 |
| pathogen | Sanger | Shigella sonnei 53G |
| pathogen | Sanger | Staphylococcus aureus MRSA252 |
| pathogen | Sanger | Staphylococcus aureus MRSA476 |
| pathogen | Sanger | Stenotrophomonas maltophilia |
| pathogen | Sanger | Streptococcus equi |
| pathogen | Sanger | Streptococcus pneumoniae 23F |
| pathogen | Sanger | Streptococcus pneumoniae INV104B |
| pathogen | Sanger | Streptococcus pyogenes |
| pathogen | Sanger | Streptococcus suis |
| pathogen | Sanger | Streptococcus uberis |
| pathogen | Sanger | Streptococcus zooepidemicus |
| pathogen | Sanger | Streptomyces coelicolor |
| pathogen | Sanger | Streptomyces scabies |
| pathogen | Sanger | Tropheryma whipplei |
| pathogen | Sanger | Wolbachia pipientis |
| pathogen | Sanger | Wolbachia-like endosymbiont of Onchocerca volvulus |
| pathogen | Sanger | Yersinia enterocolitica |
| pathogen | Sanger | Yersinia enterocolitica plasmid |
| pathogen | Sanger | Yersinia pestis |
| pathogen | Sanger | Babesia bigemina (Tick fever) |
| pathogen | Sanger | Dictyostelium discoideum (Soil amoeba) |
| pathogen | Sanger | Eimeria tenella (Coccidiosis) |
| pathogen | Sanger | Entamoeba histolytica (Amoebic dysentery) |
| pathogen | Sanger | Leishmania braziliensis (New World leishmaniasis) |
| pathogen | Sanger | Leishmania infantum (Meditteranean region leishmaniasis) |
| pathogen | Sanger | Leishmania major (Leishmaniasis) |
| pathogen | Sanger | Plasmodium berghei (Murine rodent malaria) |
| pathogen | Sanger | Plasmodium chabaudi (Murine rodent malaria) |
| pathogen | Sanger | Plasmodium falciparum Clone 3D7 (Human malaria) |
| pathogen | Sanger | Plasmodium falciparum (Human malaria - Ghanaian clinical isolate) |
| pathogen | Sanger | Plasmodium falciparum (Human malaria - IT strain) |
| pathogen | Sanger | Plasmodium gallinaceum (Avian malaria) |
| pathogen | Sanger | Plasmodium knowlesi (Monkey malaria) |
| pathogen | Sanger | Plasmodium reichenowi (Chimpanzee malaria) |
| pathogen | Sanger | Plasmodium vivax (Human malaria) |
| pathogen | Sanger | Theileria annulata (Tick borne cattle disease) |
| pathogen | Sanger | Toxplasma gondii (Toxoplasmosis) |
| pathogen | Sanger | Trypanosoma brucei (African sleeping sickness) |
| pathogen | Sanger | Trypanosoma brucei gambiense (Human-infective African sleeping sickness) |
| pathogen | Sanger | Trypanosoma congolense (Livestock-infective African sleeping sickness) |
| pathogen | Sanger | Trypanosoma vivax (Livestock-infective African sleeping sickness) |
